species:   Pimic
pid:       PID1827
parent:    Pmic_miR-4
paralog:   
locus:     scaffold_5:542437-542560
matures:   ['UAUGGGCUGGCCUAGGCAUGG', 'UGUCAGGGGCCAGCUUUCCUC']
srr:       SRP140500
genome:    /Users/jax/+Genomes/Fungal_genomes/Pimic.Pismi1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRP140500.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRP140500.cram scaffold_5:542437-542560

1 out of bounds
35 alignments
29 proper strand
26 stranded perfect matches

                                                                        ***********************      ***********************
GUCAGCAUAUGCCCGACUCCUCACAUGACCACUACCAGUGUAGCUUGGCAACUCCCUGGGGUCAGGUGACUACCUGUCAGGGGCCAGCUUUCCUCUUGGGUGCUAUGGGCUGGCCUAGGCAUGG
(((.((....))..)))...((((.(((((....((((.((.((...)).))...))))))))).))))...((((((..(((((((((((((....)))......)))))))))).)))).))
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGG l=21 a=11 c
--------------------------------------------------------------------------UGUCAGGGGCCAGCUUUCCUC----------------------------- l=21 a=0 c*
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGG l=21 a=11 ma
--------------------------------------------------------------------------UGUCAGGGGCCAGCUUUCCUC----------------------------- l=21 a=0 ma*

------------------------------------------------------------------UGACUACCUGUCAGGGGC---------------------------------------- l=18 a=1 
---------------------------------------------------------------------------------------------UCUUGGGUGCUAUGGGCUGGCCU-------- l=23 a=1 
----------------------------------------------------------------------------------------------------UGCUAUGGGCUGGCCUAGGC---- l=20 a=2 
------------------------------------------------------------------------------------------------------CUAUGGGCUGGCCUAGGCAUG- l=21 a=1 
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUG- l=20 a=6 
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGuAUGG l=21 a=1 
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGG l=21 a=11 (c,ma)
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGa l=21 a=2 
--------------------------------------------------------------------------------------------------------AUGGGCUGGCCUAGGCAUG- l=19 a=1 
---------------------------------------------------------------------------------------------------------UGGGCUGGCCUAGGCAUGG l=19 a=3 

mb-01111
ax-1001011
ku-01
ss-111111101110
fn-111
